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POPTR_0001s03410.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s03410.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s03410.1Predicted protein (655 aa)    
Predicted Functional Partners:
POPTR_0006s02290.1
Predicted protein (899 aa)
   
0.982
POPTR_0016s02100.1
Predicted protein (881 aa)
   
0.982
POPTR_0013s06430.1
Predicted protein; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (220 aa)
 
  0.973
POPTR_0010s12370.1
Predicted protein (175 aa)
 
  0.973
POPTR_0005s02020.1
Predicted protein (160 aa)
 
  0.971
POPTR_0015s07730.1
Predicted protein (205 aa)
 
  0.970
POPTR_0006s02560.1
Predicted protein (191 aa)
 
  0.970
POPTR_0013s03960.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PDF9_POPTR] (456 aa)
   
 
  0.970
POPTR_0005s05650.1
Predicted protein (474 aa)
   
 
  0.970
POPTR_0001s12510.1
Hypothetical protein (216 aa)
 
  0.968
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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