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POPTR_0001s03940.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s03940.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s03940.1Predicted protein (566 aa)    
Predicted Functional Partners:
POPTR_0011s05110.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PES4_POPTR] (454 aa)
       
      0.601
POPTR_0004s04220.1
Glutaredoxin S17 (PtrcGrx_S17.2), mRNA [source-RefSeq DNA_predicted;Acc-XM_002305767.1] (437 aa)
       
      0.601
POPTR_0010s00490.1
CBL-interacting protein kinase 1Predicted protein [source-UniProtKB/TrEMBL;Acc-A0MNI9_POPTR] (444 aa)
       
 
  0.559
POPTR_0013s05950.1
3’-5’ exonuclease domain-containing family protein (697 aa)
     
 
  0.543
POPTR_0019s05500.1
Predicted protein (483 aa)
       
 
  0.532
POPTR_0019s05490.1
Annotation not available (190 aa)
       
 
  0.532
POPTR_0019s05480.1
3’-5’ exonuclease domain-containing family protein (249 aa)
       
 
  0.532
POPTR_0013s05940.1
Annotation not available (238 aa)
       
 
  0.532
POPTR_0012s06300.1
Predicted protein (773 aa)
       
 
  0.532
POPTR_0015s04100.1
Predicted protein (780 aa)
     
 
  0.446
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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