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POPTR_0001s04290.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s04290.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s04290.1Predicted protein (665 aa)    
Predicted Functional Partners:
POPTR_0019s10280.1
Predicted protein (289 aa)
 
  0.808
POPTR_0005s16180.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (899 aa)
   
 
  0.686
POPTR_0002s08930.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (909 aa)
   
 
  0.686
POPTR_0013s06360.1
Predicted protein (280 aa)
   
 
  0.572
POPTR_0010s25300.1
Predicted protein (277 aa)
   
 
  0.572
POPTR_0010s12670.1
Predicted protein (303 aa)
   
 
  0.572
POPTR_0009s15880.1
Predicted protein (278 aa)
   
 
  0.572
POPTR_0008s12560.1
Predicted protein (275 aa)
   
 
  0.572
POPTR_0006s23520.1
Predicted protein (322 aa)
   
 
  0.572
POPTR_0004s20550.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8M7_POPTR] (278 aa)
   
 
  0.572
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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