STRINGSTRING
POPTR_0001s04500.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s04500.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s04500.1Predicted protein (313 aa)    
Predicted Functional Partners:
POPTR_0008s11730.1
Predicted protein (586 aa)
     
  0.978
POPTR_0012s06210.1
Uncharacterized protein (392 aa)
     
  0.977
POPTR_0012s06200.1
Uncharacterized protein (115 aa)
     
  0.977
POPTR_0010s13760.1
Predicted protein (587 aa)
     
  0.977
POPTR_0004s09500.1
Hypothetical protein (962 aa)
     
  0.977
POPTR_0009s02010.1
Predicted protein (830 aa)
       
  0.970
POPTR_0004s22110.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFF6_POPTR] (840 aa)
       
  0.970
POPTR_0001s27330.1
Predicted protein (141 aa)
       
  0.970
POPTR_0003s02900.1
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B (431 aa)
     
  0.964
POPTR_0018s05050.1
Predicted protein (517 aa)
     
  0.962
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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