STRINGSTRING
POPTR_0001s04710.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s04710.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s04710.1Predicted protein (714 aa)    
Predicted Functional Partners:
POPTR_0011s11380.1
Predicted protein (445 aa)
       
  0.913
POPTR_0001s40440.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBD7_POPTR] (443 aa)
       
  0.913
POPTR_0017s00430.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGJ5_POPTR] (467 aa)
     
  0.911
POPTR_0005s27150.1
Predicted protein (809 aa)
     
  0.841
POPTR_0002s01210.1
Uncharacterized protein (215 aa)
     
  0.837
POPTR_0002s02960.1
Predicted protein (192 aa)
       
  0.799
POPTR_0001s36830.1
Predicted protein (1088 aa)
     
      0.779
POPTR_0014s07120.1
Predicted protein (473 aa)
     
  0.763
POPTR_0004s05770.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGS5_POPTR] (380 aa)
     
  0.755
POPTR_0013s00610.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9P5_POPTR] (409 aa)
     
  0.753
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]