STRINGSTRING
POPTR_0001s04790.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s04790.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s04790.1Predicted protein (315 aa)    
Predicted Functional Partners:
POPTR_0010s02420.1
Predicted protein (463 aa)
     
  0.983
POPTR_0008s22640.1
Predicted protein (480 aa)
     
  0.983
POPTR_0010s23850.1
Predicted protein (384 aa)
     
  0.718
POPTR_0008s02930.1
Uncharacterized protein (382 aa)
     
  0.718
POPTR_0001s34940.1
Uncharacterized protein (590 aa)
     
  0.718
POPTR_0006s12460.1
Uncharacterized protein (87 aa)
       
 
  0.711
POPTR_0014s12690.1
Putative uncharacterized protein Wee1-2 [source-UniProtKB/TrEMBL;Acc-B9I9U2_POPTR] (473 aa)
       
 
  0.710
POPTR_0002s20940.1
Annotation not available (406 aa)
       
 
  0.710
POPTR_0019s07980.1
CBS domain-containing family protein (301 aa)
     
  0.707
POPTR_0017s08070.1
Predicted protein; Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways (443 aa)
     
  0.707
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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