STRINGSTRING
POPTR_0001s04850.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s04850.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s04850.1Predicted protein (343 aa)    
Predicted Functional Partners:
POPTR_0001s45530.1
Caffeic acid 3-O-methyltransferase [source-UniProtKB/TrEMBL;Acc-B9GJ54_POPTR] (371 aa)
     
 
    0.907
POPTR_0014s10220.1
Catechol o-methyltransferase relatedPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P937_POPTR] (358 aa)
     
 
    0.903
POPTR_0001s38130.1
Cinnamyl alcohol dehydrogenase-like protein (CADL11), mRNA [source-RefSeq DNA_predicted;Acc-XM_002300364.1] (246 aa)
     
 
    0.903
POPTR_0016s02390.1
Uncharacterized protein (354 aa)
     
 
    0.902
POPTR_0016s02360.1
Cinnamyl alcohol dehydrogenase-like protein [source-UniProtKB/TrEMBL;Acc-B9IHF9_POPTR] (354 aa)
     
 
    0.902
POPTR_0009s06780.1
Cinnamyl alcohol dehydrogenase-like protein [source-UniProtKB/TrEMBL;Acc-B9HNN0_POPTR] (360 aa)
     
 
    0.902
POPTR_0009s06770.1
Cinnamyl alcohol dehydrogenase-like protein (CADL1), mRNA [source-RefSeq DNA_predicted;Acc-XM_002336143.1] (360 aa)
     
 
    0.902
POPTR_0011s15130.1
Cinnamyl-alcohol dehydrogenase family protein (354 aa)
     
 
    0.900
POPTR_0535s00230.1
Glycosyltransferase (466 aa)
         
    0.900
POPTR_0019s11400.1
Predicted protein (177 aa)
         
    0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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