STRINGSTRING
POPTR_0001s05160.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s05160.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s05160.1Hypothetical protein (559 aa)    
Predicted Functional Partners:
POPTR_0006s23950.1
Predicted protein (373 aa)
      
   
  0.630
POPTR_0018s09970.1
Predicted protein (381 aa)
            
  0.585
POPTR_0002s25280.1
Predicted protein (440 aa)
            
  0.531
POPTR_0001s35750.1
Predicted protein (300 aa)
            
  0.524
POPTR_0011s11490.1
Hypothetical protein (150 aa)
   
   
  0.497
POPTR_0010s02890.1
Methionine sulfoxide reductase type [source-UniProtKB/TrEMBL;Acc-B9HY96_POPTR] (116 aa)
   
   
  0.497
POPTR_0009s08420.1
Methionine sulfoxide reductase type [source-UniProtKB/TrEMBL;Acc-B9HN65_POPTR] (136 aa)
   
   
  0.497
POPTR_0008s20300.1
Methionine sulfoxide reductase type [source-UniProtKB/TrEMBL;Acc-B9HM98_POPTR] (133 aa)
   
   
  0.497
POPTR_0001s29320.1
Methionine sulfoxide reductase type [source-UniProtKB/TrEMBL;Acc-B9GJ03_POPTR] (214 aa)
   
   
  0.497
POPTR_0016s12500.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGA5_POPTR] (223 aa)
            
  0.428
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (10%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >