STRINGSTRING
POPTR_0001s05390.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s05390.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s05390.1Predicted protein (413 aa)    
Predicted Functional Partners:
POPTR_0014s09370.1
Predicted protein (467 aa)
       
      0.602
POPTR_0002s17140.1
Predicted protein (408 aa)
       
      0.602
POPTR_0014s02120.1
Predicted protein (363 aa)
           
  0.574
POPTR_0005s17720.1
D2/4-type cyclin [source-UniProtKB/TrEMBL;Acc-A8Y908_POPTR] (337 aa)
           
  0.574
POPTR_0002s12310.1
Predicted protein (360 aa)
           
  0.574
POPTR_0002s10370.1
Cyclin d2 family protein (353 aa)
           
  0.574
POPTR_0015s10040.1
Jumonji domain protein [source-UniProtKB/TrEMBL;Acc-B9IF38_POPTR] (1630 aa)
           
  0.491
POPTR_0012s09390.1
Predicted protein (1672 aa)
           
  0.491
POPTR_0010s23160.1
Uncharacterized protein (1627 aa)
           
  0.491
POPTR_0008s03760.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-B9HLJ5_POPTR] (1150 aa)
           
  0.491
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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