STRINGSTRING
POPTR_0001s05560.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s05560.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s05560.1Predicted protein (858 aa)    
Predicted Functional Partners:
POPTR_0016s02620.1
Predicted protein (673 aa)
 
        0.701
POPTR_0006s02850.1
Predicted protein (670 aa)
 
          0.682
POPTR_0019s08450.1
Predicted protein (437 aa)
 
        0.540
POPTR_0008s18920.1
Melibiase (630 aa)
 
        0.530
POPTR_0001s30610.1
Predicted protein (843 aa)
 
        0.515
POPTR_0010s05840.1
Predicted protein (649 aa)
 
          0.514
POPTR_0018s14920.1
Predicted protein (430 aa)
 
          0.512
POPTR_0010s26170.1
Predicted protein (426 aa)
 
          0.511
POPTR_0004s03830.1
Predicted protein (404 aa)
 
          0.509
POPTR_0010s05830.1
Melibiase (483 aa)
 
          0.508
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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