STRINGSTRING
POPTR_0001s06370.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s06370.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s06370.1Predicted protein (358 aa)    
Predicted Functional Partners:
POPTR_0004s17990.1
Predicted protein (254 aa)
     
  0.890
POPTR_0014s14440.1
Predicted protein (1006 aa)
     
  0.676
POPTR_0012s14250.1
Leucine-rich repeat protein kinase (984 aa)
     
  0.676
POPTR_0015s14270.1
Leucine-rich repeat protein kinase (870 aa)
     
  0.675
POPTR_0019s08860.1
Uncharacterized protein (728 aa)
     
  0.668
POPTR_0019s08780.1
Uncharacterized protein (741 aa)
     
  0.668
POPTR_0015s15150.1
Uncharacterized protein (897 aa)
     
  0.668
POPTR_0014s18490.1
Predicted protein (1199 aa)
     
  0.668
POPTR_0002s26010.1
Predicted protein (1221 aa)
     
  0.668
POPTR_0002s25980.1
Predicted protein (1202 aa)
     
  0.668
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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