Groups of genes that are frequently observed in each other's genomic neighborhood.
Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Hsr203J family protein (340 aa)
Predicted Functional Partners:
Uncharacterized protein; Belongs to the FPP/GGPP synthase family (312 aa)
Geranylgeranyl pyrophosphate synthase family protein; Belongs to the FPP/GGPP synthase family (345 aa)
Uncharacterized protein; Belongs to the FPP/GGPP synthase family (347 aa)
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (189 aa)
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (243 aa)
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
annotation not available (126 aa)
annotation not available (507 aa)
Uncharacterized protein (123 aa)
PHYTOALEXIN DEFICIENT 4 family protein; PAD4 (502 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar