• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s06970.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s06970.1" - Hsr203J family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s06970.1Hsr203J family protein (340 aa)    
Predicted Functional Partners:
POPTR_0015s04050.1
Uncharacterized protein; Belongs to the FPP/GGPP synthase family (312 aa)
           
  0.629
POPTR_0009s14150.1
Geranylgeranyl pyrophosphate synthase family protein; Belongs to the FPP/GGPP synthase family (345 aa)
           
  0.588
POPTR_0004s18610.1
Uncharacterized protein; Belongs to the FPP/GGPP synthase family (347 aa)
           
  0.588
POPTR_1770s00200.1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (189 aa)
           
  0.579
POPTR_0021s01020.1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (243 aa)
           
  0.579
POPTR_0004s01780.1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
           
  0.579
POPTR_0007s04680.1
annotation not available (126 aa)
           
  0.469
POPTR_0007s04670.1
annotation not available (507 aa)
           
  0.469
POPTR_0005s06970.1
Uncharacterized protein (123 aa)
           
  0.469
POPTR_0005s06960.1
PHYTOALEXIN DEFICIENT 4 family protein; PAD4 (502 aa)
           
  0.469
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (6%) [HD]