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POPTR_0001s07150.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s07150.1" - Global transcription factor group [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s07150.1Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9GLV1_POPTR] (1456 aa)    
Predicted Functional Partners:
POPTR_0010s23560.1
Uncharacterized protein (1284 aa)
     
 
  0.971
POPTR_0009s12720.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9HRF8_POPTR] (1042 aa)
     
 
  0.971
POPTR_0004s16940.1
Predicted protein (1051 aa)
     
 
  0.971
POPTR_0003s09640.1
Predicted protein (514 aa)
     
 
  0.964
POPTR_0001s01830.1
Predicted protein (343 aa)
     
 
  0.964
POPTR_0010s26160.1
Predicted protein; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
       
 
  0.943
POPTR_0008s00300.1
Predicted protein; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
       
 
  0.943
POPTR_0017s11460.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9IJT6_POPTR] (610 aa)
     
 
  0.855
POPTR_0004s12290.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9H0D7_POPTR] (644 aa)
     
 
  0.855
POPTR_0005s10940.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
     
 
  0.849
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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