POPTR_0001s07720.1 protein (Populus trichocarpa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

POPTR_0001s07720.1

Uncharacterized protein (160 aa)

Predicted Functional Partners:

POPTR_0001s35320.1

0.937

POPTR_0002s24630.1

0.933

POPTR_0017s10690.1

0.928

POPTR_0014s18980.1

0.928

POPTR_0002s24580.1

0.928

POPTR_0001s08870.1

0.821

POPTR_0014s02410.1

0.457

POPTR_0011s07310.1

0.457

POPTR_0011s07300.1

0.457

POPTR_0009s10090.1

0.457

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
POPTR_0001s07720.1	POPTR_0001s08870.1	Uncharacterized protein	Predicted protein	0.821
POPTR_0001s07720.1	POPTR_0001s35320.1	Uncharacterized protein	Predicted protein	0.937
POPTR_0001s07720.1	POPTR_0002s24580.1	Uncharacterized protein	Predicted protein	0.928
POPTR_0001s07720.1	POPTR_0002s24630.1	Uncharacterized protein	Predicted protein	0.933
POPTR_0001s07720.1	POPTR_0009s10090.1	Uncharacterized protein	Predicted protein	0.457
POPTR_0001s07720.1	POPTR_0011s07300.1	Uncharacterized protein	Predicted protein	0.457
POPTR_0001s07720.1	POPTR_0011s07310.1	Uncharacterized protein	Predicted protein	0.457
POPTR_0001s07720.1	POPTR_0014s02410.1	Uncharacterized protein	Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAA1_POPTR]	0.457
POPTR_0001s07720.1	POPTR_0014s18980.1	Uncharacterized protein	Predicted protein	0.928
POPTR_0001s07720.1	POPTR_0017s10690.1	Uncharacterized protein	Predicted protein	0.928
POPTR_0001s08870.1	POPTR_0001s07720.1	Predicted protein	Uncharacterized protein	0.821
POPTR_0001s08870.1	POPTR_0001s35320.1	Predicted protein	Predicted protein	0.995
POPTR_0001s08870.1	POPTR_0002s24580.1	Predicted protein	Predicted protein	0.946
POPTR_0001s08870.1	POPTR_0002s24630.1	Predicted protein	Predicted protein	0.996
POPTR_0001s08870.1	POPTR_0014s18980.1	Predicted protein	Predicted protein	0.988
POPTR_0001s08870.1	POPTR_0017s10690.1	Predicted protein	Predicted protein	0.988
POPTR_0001s35320.1	POPTR_0001s07720.1	Predicted protein	Uncharacterized protein	0.937
POPTR_0001s35320.1	POPTR_0001s08870.1	Predicted protein	Predicted protein	0.995
POPTR_0001s35320.1	POPTR_0002s24580.1	Predicted protein	Predicted protein	0.983
POPTR_0001s35320.1	POPTR_0002s24630.1	Predicted protein	Predicted protein	0.997

page 1 of 3

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2017

Credits

Access

Info

About