POPTR_0001s07720.1 protein (Populus trichocarpa)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

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Score

POPTR_0001s07720.1

Uncharacterized protein (160 aa)

Predicted Functional Partners:

POPTR_0001s35320.1

0.937

POPTR_0002s24630.1

0.933

POPTR_0017s10690.1

0.928

POPTR_0014s18980.1

0.928

POPTR_0002s24580.1

0.928

POPTR_0001s08870.1

0.821

POPTR_0014s02410.1

0.457

POPTR_0011s07310.1

0.457

POPTR_0011s07300.1

0.457

POPTR_0009s10090.1

0.457

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family

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... protein annotations:

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
POPTR_0001s07720.1	POPTR_0001s08870.1	Uncharacterized protein	Predicted protein	0.821
POPTR_0001s07720.1	POPTR_0001s35320.1	Uncharacterized protein	Predicted protein	0.937
POPTR_0001s07720.1	POPTR_0002s24580.1	Uncharacterized protein	Predicted protein	0.928
POPTR_0001s07720.1	POPTR_0002s24630.1	Uncharacterized protein	Predicted protein	0.933
POPTR_0001s07720.1	POPTR_0009s10090.1	Uncharacterized protein	Predicted protein	0.457
POPTR_0001s07720.1	POPTR_0011s07300.1	Uncharacterized protein	Predicted protein	0.457
POPTR_0001s07720.1	POPTR_0011s07310.1	Uncharacterized protein	Predicted protein	0.457
POPTR_0001s07720.1	POPTR_0014s02410.1	Uncharacterized protein	Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAA1_POPTR]	0.457
POPTR_0001s07720.1	POPTR_0014s18980.1	Uncharacterized protein	Predicted protein	0.928
POPTR_0001s07720.1	POPTR_0017s10690.1	Uncharacterized protein	Predicted protein	0.928
POPTR_0001s08870.1	POPTR_0001s07720.1	Predicted protein	Uncharacterized protein	0.821
POPTR_0001s08870.1	POPTR_0001s35320.1	Predicted protein	Predicted protein	0.995
POPTR_0001s08870.1	POPTR_0002s24580.1	Predicted protein	Predicted protein	0.946
POPTR_0001s08870.1	POPTR_0002s24630.1	Predicted protein	Predicted protein	0.996
POPTR_0001s08870.1	POPTR_0014s18980.1	Predicted protein	Predicted protein	0.988
POPTR_0001s08870.1	POPTR_0017s10690.1	Predicted protein	Predicted protein	0.988
POPTR_0001s35320.1	POPTR_0001s07720.1	Predicted protein	Uncharacterized protein	0.937
POPTR_0001s35320.1	POPTR_0001s08870.1	Predicted protein	Predicted protein	0.995
POPTR_0001s35320.1	POPTR_0002s24580.1	Predicted protein	Predicted protein	0.983
POPTR_0001s35320.1	POPTR_0002s24630.1	Predicted protein	Predicted protein	0.997

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