STRINGSTRING
POPTR_0001s07920.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s07920.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s07920.1Predicted protein (227 aa)    
Predicted Functional Partners:
POPTR_0014s09920.1
Predicted protein (409 aa)
     
  0.880
POPTR_0007s11320.1
CPK related protein kinase 7 [source-UniProtKB/TrEMBL;Acc-B9HE65_POPTR] (606 aa)
     
  0.874
POPTR_0014s09930.1
Annotation not available (222 aa)
     
  0.869
POPTR_0002s17720.1
Cpk-related protein kinase 3 [source-UniProtKB/TrEMBL;Acc-B9GR65_POPTR] (414 aa)
     
  0.868
POPTR_0016s12460.1
Calcium dependent protein kinase 13 [source-UniProtKB/TrEMBL;Acc-B9IGA3_POPTR] (431 aa)
     
  0.866
POPTR_0016s12450.1
Annotation not available (103 aa)
     
  0.866
POPTR_0006s10220.1
Uncharacterized protein (185 aa)
     
  0.866
POPTR_0005s27290.1
Predicted protein (469 aa)
     
  0.866
POPTR_0015s13790.1
Predicted protein (526 aa)
     
  0.866
POPTR_0002s17730.1
Annotation not available (213 aa)
     
  0.865
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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