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STRINGSTRING
POPTR_0001s08690.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s08690.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s08690.1Uncharacterized protein (370 aa)    
Predicted Functional Partners:
POPTR_0006s29310.1
Phosphate translocator-related family protein (409 aa)
           
  0.671
PtrEXPA23
Expansin S1 family protein; Putative uncharacterized protein PtrEXPA23 [source-UniProtKB/TrEMBL;Acc-B9MWX2_POPTR] (284 aa)
           
  0.599
PtrEXPA8
Putative uncharacterized protein PtrEXPA8 [source-UniProtKB/TrEMBL;Acc-B9H3G6_POPTR] (273 aa)
           
  0.599
POPTR_0007s04110.1
annotation not available (211 aa)
           
  0.561
POPTR_0005s06380.1
Uncharacterized protein (399 aa)
           
  0.561
POPTR_0018s09130.1
Uncharacterized protein (142 aa)
     
 
  0.542
POPTR_0010s21110.1
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family (227 aa)
           
  0.535
POPTR_0008s05630.1
annotation not available (199 aa)
           
  0.535
POPTR_0019s10010.1
Uncharacterized protein (885 aa)
   
   
  0.402
POPTR_0013s10550.1
Uncharacterized protein (127 aa)
   
   
  0.402
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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