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POPTR_0001s09210.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s09210.1" - Heavy metal ATPase in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s09210.1Heavy metal ATPase (965 aa)    
Predicted Functional Partners:
POPTR_2131s00200.1
Predicted protein (134 aa)
     
  0.907
POPTR_1177s00200.1
Predicted protein (131 aa)
     
  0.907
POPTR_0872s00200.1
Predicted protein (356 aa)
     
  0.907
POPTR_0720s00200.1
Annotation not available (111 aa)
     
  0.907
POPTR_0161s00200.1
Uncharacterized protein (287 aa)
     
  0.907
POPTR_0063s00270.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002329312.1] (182 aa)
     
  0.907
POPTR_0045s00240.1
Uncharacterized protein (102 aa)
     
  0.907
POPTR_0019s13840.1
Predicted protein (140 aa)
     
  0.907
POPTR_0019s13740.1
Predicted protein (140 aa)
     
  0.907
POPTR_0018s14710.1
Predicted protein (111 aa)
     
  0.907
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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