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POPTR_0001s09460.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s09460.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s09460.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002299493.1] (55 aa)    
Predicted Functional Partners:
POPTR_0018s13210.1
Sodium transporter hkt1-like protein (506 aa)
   
   
  0.550
POPTR_0010s26000.1
Vacuolar ATP synthase catalytic subunit A family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PET4_POPTR] (623 aa)
   
 
  0.544
POPTR_0008s00560.1
Vacuolar ATP synthase catalytic subunit A family protein (623 aa)
   
 
  0.544
POPTR_0009s10050.1
DNA-directed RNA polymerase II 36 kDa polypeptide B family protein (323 aa)
       
 
  0.447
POPTR_0005s27230.1
Dolichyl-phosphate beta-D-mannosyltransferase family protein (238 aa)
       
 
  0.412
POPTR_0002s01130.1
Dolichyl-phosphate beta-D-mannosyltransferase family protein (240 aa)
       
 
  0.412
POPTR_0009s12430.1
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase (821 aa)
   
 
  0.406
POPTR_0005s25550.1
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase (817 aa)
   
 
  0.406
POPTR_0004s16750.1
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase (821 aa)
   
 
  0.406
POPTR_0002s03010.1
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase (807 aa)
   
 
  0.406
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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