STRINGSTRING
POPTR_0001s09580.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s09580.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s09580.1Predicted protein (478 aa)    
Predicted Functional Partners:
POPTR_0130s00210.1
Predicted protein (478 aa)
       
 
  0.588
POPTR_0018s08770.1
Predicted protein (477 aa)
       
 
  0.588
POPTR_0006s16110.1
Uncharacterized protein (478 aa)
       
 
  0.588
POPTR_0011s12230.1
Predicted protein (584 aa)
       
      0.565
POPTR_0006s23650.1
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) (375 aa)
       
      0.565
POPTR_0014s04340.1
Predicted protein (342 aa)
           
  0.495
POPTR_0001s03050.1
Predicted protein (392 aa)
           
  0.495
POPTR_0003s13790.1
Proline transporter [source-UniProtKB/TrEMBL;Acc-B9GL79_POPTR] (453 aa)
           
  0.495
POPTR_0010s01850.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEX6_POPTR] (544 aa)
       
      0.459
POPTR_0008s22080.1
Uncharacterized protein (466 aa)
       
      0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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