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POPTR_0001s09770.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s09770.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s09770.1Predicted protein (188 aa)    
Predicted Functional Partners:
POPTR_0016s03980.1
Predicted protein (504 aa)
         
  0.900
POPTR_0006s04160.1
Predicted protein (504 aa)
         
  0.900
POPTR_0019s04610.1
Uncharacterized protein (130 aa)
         
    0.900
POPTR_0013s08610.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9N168_POPTR] (464 aa)
         
    0.900
POPTR_0013s05000.1
Predicted protein (489 aa)
         
    0.900
POPTR_0007s10980.1
Zeaxanthin epoxidase, chloroplastic (643 aa)
         
    0.900
POPTR_0006s12150.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9MTJ7_POPTR] (545 aa)
         
    0.900
POPTR_0005s18160.1
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (692 aa)
         
    0.900
POPTR_0002s04730.1
Uncharacterized protein (135 aa)
         
    0.900
POPTR_0001s23620.1
Uncharacterized protein (470 aa)
         
    0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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