STRINGSTRING
POPTR_0001s09890.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s09890.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s09890.1Uncharacterized protein (331 aa)    
Predicted Functional Partners:
TOP6B
DNA topoisomerase 6 subunit B ; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP (673 aa)
 
 
  0.982
POPTR_0001s32760.1
Predicted protein (1316 aa)
     
  0.972
POPTR_0004s18540.1
Predicted protein (2740 aa)
       
 
  0.948
POPTR_0006s13750.1
Predicted protein (348 aa)
     
  0.892
POPTR_0018s06880.1
Uncharacterized protein (247 aa)
     
  0.882
POPTR_0018s06870.1
Annotation not available (174 aa)
     
  0.882
POPTR_0016s05810.1
Predicted protein (451 aa)
     
  0.882
POPTR_0006s15110.1
Annotation not available (171 aa)
     
  0.882
POPTR_0006s15100.1
Predicted protein (247 aa)
     
  0.882
POPTR_0006s04660.1
Uncharacterized protein (381 aa)
     
  0.882
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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