STRINGSTRING
POPTR_0001s10060.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s10060.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s10060.1Predicted protein (342 aa)    
Predicted Functional Partners:
POPTR_0005s27210.1
Predicted protein (552 aa)
         
  0.489
POPTR_0015s13060.1
Acyl-coa ligase [source-UniProtKB/TrEMBL;Acc-B9ID90_POPTR] (524 aa)
         
  0.480
POPTR_1429s00200.1
Predicted protein (124 aa)
   
        0.473
POPTR_0017s07770.1
Predicted protein (401 aa)
   
        0.473
POPTR_0019s07600.1
4-Coumarate-CoA ligasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGE3_POPTR] (570 aa)
   
        0.464
POPTR_0012s09650.1
Acyl-coa ligase [source-UniProtKB/TrEMBL;Acc-B9I3N0_POPTR] (550 aa)
   
        0.463
POPTR_2088s00210.1
Predicted protein (66 aa)
              0.451
POPTR_0365s00200.1
AMP-dependent synthetase and ligase family protein (553 aa)
              0.451
POPTR_0019s09610.1
Acyl-coa ligase acetate-coa synthetase-like protein [source-UniProtKB/TrEMBL;Acc-B9N1N6_POPTR] (649 aa)
              0.451
POPTR_0019s09600.1
Predicted protein (541 aa)
              0.451
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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