STRINGSTRING
POPTR_0001s10090.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s10090.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s10090.1Predicted protein (655 aa)    
Predicted Functional Partners:
POPTR_0006s10590.1
Hypothetical protein (468 aa)
     
   
  0.599
POPTR_0016s13580.1
Predicted protein (507 aa)
           
  0.588
POPTR_0013s14950.1
Uncharacterized protein (395 aa)
           
  0.588
POPTR_0001s18780.1
Predicted protein (98 aa)
           
  0.588
POPTR_0014s05080.1
Predicted protein (109 aa)
           
  0.586
POPTR_0016s01920.1
Predicted protein (380 aa)
           
  0.532
POPTR_0002s26050.1
Predicted protein (933 aa)
           
  0.525
POPTR_0005s24390.1
Basic helix-loop-helix family protein (694 aa)
     
   
  0.512
POPTR_0011s13830.1
Pectinesterase (550 aa)
           
  0.426
POPTR_0011s00480.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE41_POPTR]; Acts in the modification of cell walls via demethylesterification of cell wall pectin (549 aa)
           
  0.426
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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