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POPTR_0001s10600.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s10600.1" - Inner membrane protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s10600.1Inner membrane protein (459 aa)    
Predicted Functional Partners:
POPTR_0008s18240.1
60 kDa inner membrane protein (535 aa)
   
   
  0.932
POPTR_0009s03450.1
Inner membrane protein (258 aa)
   
   
    0.881
POPTR_0001s24460.1
Inner membrane protein ALBINO3 (294 aa)
   
   
    0.878
POPTR_0010s06180.1
60 kDa inner membrane protein (545 aa)
   
   
0.861
POPTR_0006s07260.1
Inner membrane protein (365 aa)
   
   
 
0.803
POPTR_0018s13680.1
Inner membrane protein (246 aa)
   
   
 
0.802
POPTR_0513s00210.1
Annotation not available (140 aa)
   
   
 
0.801
POPTR_0018s10650.1
SecY protein (550 aa)
     
 
  0.780
POPTR_0006s18970.1
Hypothetical protein (461 aa)
     
 
  0.780
POPTR_0009s06380.1
Predicted protein; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1482 aa)
   
   
  0.759
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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