POPTR_0001s11260.1 protein (Populus trichocarpa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

POPTR_0001s11260.1

Uncharacterized protein (217 aa)

Predicted Functional Partners:

POPTR_0015s04720.1

0.661

POPTR_0098s00200.1

0.451

POPTR_0014s02290.1

0.451

POPTR_0013s10050.1

0.451

POPTR_0011s12080.1

0.451

POPTR_0010s25600.1

0.451

POPTR_0010s07420.1

0.451

POPTR_0009s09950.1

0.451

POPTR_0008s01000.1

0.451

POPTR_0002s12420.1

0.451

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
POPTR_0001s11260.1	POPTR_0002s12420.1	Uncharacterized protein	Predicted protein	0.451
POPTR_0001s11260.1	POPTR_0008s01000.1	Uncharacterized protein	Predicted protein	0.451
POPTR_0001s11260.1	POPTR_0009s09950.1	Uncharacterized protein	Predicted protein	0.451
POPTR_0001s11260.1	POPTR_0010s07420.1	Uncharacterized protein	Predicted protein	0.451
POPTR_0001s11260.1	POPTR_0010s25600.1	Uncharacterized protein	Predicted protein	0.451
POPTR_0001s11260.1	POPTR_0011s12080.1	Uncharacterized protein	Predicted protein	0.451
POPTR_0001s11260.1	POPTR_0013s10050.1	Uncharacterized protein	Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI34_POPTR]	0.451
POPTR_0001s11260.1	POPTR_0014s02290.1	Uncharacterized protein	Predicted protein	0.451
POPTR_0001s11260.1	POPTR_0015s04720.1	Uncharacterized protein	Predicted protein	0.661
POPTR_0001s11260.1	POPTR_0098s00200.1	Uncharacterized protein	Uncharacterized protein	0.451
POPTR_0002s12420.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.451
POPTR_0008s01000.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.451
POPTR_0009s09950.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.451
POPTR_0010s07420.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.451
POPTR_0010s25600.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.451
POPTR_0011s12080.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.451
POPTR_0013s10050.1	POPTR_0001s11260.1	Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI34_POPTR]	Uncharacterized protein	0.451
POPTR_0014s02290.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.451
POPTR_0015s04720.1	POPTR_0001s11260.1	Predicted protein	Uncharacterized protein	0.661
POPTR_0098s00200.1	POPTR_0001s11260.1	Uncharacterized protein	Uncharacterized protein	0.451

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2018

Credits

Access

Info

About