STRINGSTRING
POPTR_0001s11280.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s11280.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s11280.1Hypothetical protein (791 aa)    
Predicted Functional Partners:
POPTR_0008s22640.1
Predicted protein (480 aa)
     
 
  0.804
POPTR_0010s02420.1
Predicted protein (463 aa)
     
 
  0.796
POPTR_0008s20340.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAW4_POPTR] (345 aa)
     
  0.756
POPTR_0010s02960.1
Hypothetical protein (184 aa)
     
  0.754
POPTR_0016s01310.1
Predicted protein (339 aa)
     
  0.753
POPTR_0006s01590.1
Predicted protein (339 aa)
     
  0.753
POPTR_0067s00220.1
Uncharacterized protein (117 aa)
     
  0.748
POPTR_0019s08510.1
Predicted protein (349 aa)
     
  0.748
POPTR_0016s01330.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002323117.1] (208 aa)
     
  0.748
POPTR_0014s16020.1
Predicted protein (352 aa)
     
  0.748
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (23%) [HD]