STRINGSTRING
ERF12 protein (Populus trichocarpa) - STRING interaction network
"ERF12" - Uncharacterized protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
ERF12Uncharacterized protein; AP2/ERF domain-containing transcription factor [source-UniProtKB/TrEMBL;Acc-B9GK35_POPTR] (262 aa)    
Predicted Functional Partners:
POPTR_0010s08760.1
Basic helix-loop-helix family protein (219 aa)
     
   
  0.586
POPTR_0008s16170.1
Basic helix-loop-helix family protein (301 aa)
     
   
  0.586
POPTR_0007s03920.1
Uncharacterized protein (249 aa)
           
  0.583
POPTR_0003s09900.1
Uncharacterized protein (808 aa)
           
  0.582
POPTR_0001s01610.1
Early-responsive to dehydration family protein (796 aa)
           
  0.582
POPTR_0007s08630.1
Uncharacterized protein (812 aa)
           
  0.580
POPTR_0005s11040.1
Uncharacterized protein (798 aa)
           
  0.580
NAC045
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9HF58_POPTR] (304 aa)
     
   
  0.564
NAC043
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9H4N3_POPTR] (307 aa)
     
   
  0.564
POPTR_0010s17130.1
annotation not available (634 aa)
           
  0.536
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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