STRINGSTRING
POPTR_0001s12230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s12230.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s12230.1Predicted protein (215 aa)    
Predicted Functional Partners:
POPTR_0019s10040.1
Predicted protein (864 aa)
       
 
  0.864
POPTR_0013s10510.1
Predicted protein (922 aa)
       
 
  0.864
POPTR_0005s10860.1
Predicted protein (373 aa)
     
 
  0.755
POPTR_0012s12020.1
Predicted protein (181 aa)
   
   
  0.725
POPTR_0001s12920.1
Predicted protein (245 aa)
   
   
  0.709
POPTR_0001s13480.1
Isomerase peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (263 aa)
     
 
  0.700
POPTR_0003s16610.1
Predicted protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (263 aa)
     
 
  0.699
POPTR_0001s47130.1
Predicted protein (205 aa)
   
   
  0.672
POPTR_0008s05810.1
Peptidyl-prolyl cis-trans isomerase (185 aa)
   
     
  0.672
POPTR_0010s24120.1
Predicted protein (266 aa)
     
 
  0.661
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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