STRINGSTRING
POPTR_0001s12360.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s12360.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s12360.1Predicted protein (278 aa)    
Predicted Functional Partners:
POPTR_0008s10050.1
Predicted protein (421 aa)
     
        0.555
POPTR_0018s09080.1
Predicted protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (987 aa)
     
        0.522
POPTR_0013s02160.1
Predicted protein (339 aa)
     
        0.478
POPTR_0001s39310.1
Uncharacterized protein (249 aa)
     
        0.467
POPTR_0011s10720.1
Predicted protein (241 aa)
     
        0.465
POPTR_0008s09000.1
SET domain-containing protein (493 aa)
     
        0.448
POPTR_0010s16010.1
Predicted protein (423 aa)
     
        0.433
POPTR_0001s34620.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002323770.1] (447 aa)
     
        0.428
POPTR_0006s23700.1
Predicted protein (252 aa)
     
        0.406
POPTR_0015s05490.1
Predicted protein (460 aa)
     
   
  0.403
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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