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POPTR_0001s12460.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s12460.1" - Peptidase M50 family protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s12460.1Peptidase M50 family protein (244 aa)    
Predicted Functional Partners:
POPTR_0018s08810.1
Uncharacterized protein (1023 aa)
           
  0.822
POPTR_0005s27930.1
BZIP transcription factor family protein (306 aa)
           
  0.741
POPTR_0001s29700.1
Uncharacterized protein (623 aa)
           
  0.679
POPTR_0010s20590.1
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family (719 aa)
         
  0.676
POPTR_0008s06060.1
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family (691 aa)
         
  0.676
POPTR_0010s19810.1
annotation not available (181 aa)
           
  0.634
POPTR_0008s06640.1
Uncharacterized protein (541 aa)
           
  0.634
POPTR_0015s13920.1
Uncharacterized protein (300 aa)
   
   
  0.619
POPTR_0012s13950.1
Uncharacterized protein (193 aa)
   
   
  0.619
POPTR_0003s01380.1
Rhomboid family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBE1_POPTR] (325 aa)
         
  0.608
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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