STRINGSTRING
POPTR_0001s12490.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s12490.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s12490.1Predicted protein (107 aa)    
Predicted Functional Partners:
POPTR_0013s10990.1
Predicted protein (426 aa)
   
   
  0.842
POPTR_0013s09940.1
Predicted protein (372 aa)
   
   
  0.842
POPTR_0010s22830.1
P-aminobenzoate synthase [source-UniProtKB/TrEMBL;Acc-B9HUE3_POPTR] (928 aa)
         
  0.745
POPTR_0014s16030.1
Predicted protein (686 aa)
   
   
  0.718
POPTR_0010s10660.1
Threonyl-tRNA synthetase family protein (613 aa)
   
   
  0.718
POPTR_0008s14490.1
Predicted protein (715 aa)
   
   
  0.718
POPTR_0017s08450.1
Predicted protein (801 aa)
   
   
  0.689
POPTR_0001s32490.1
Predicted protein (805 aa)
   
   
  0.689
POPTR_0018s06640.1
Predicted protein (595 aa)
   
   
  0.660
POPTR_0013s06440.1
Predicted protein (598 aa)
   
   
  0.660
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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