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POPTR_0001s12860.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s12860.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s12860.1Uncharacterized protein (1115 aa)    
Predicted Functional Partners:
POPTR_0016s14220.1
Uncharacterized protein (221 aa)
           
  0.792
POPTR_0016s11820.1
Uncharacterized protein (702 aa)
     
   
  0.750
POPTR_0005s05970.1
Glycosyl transferase family 48 family protein (1906 aa)
           
  0.741
CYP703A4
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9GR20_POPTR] (521 aa)
           
  0.733
POPTR_0006s09740.1
annotation not available (240 aa)
     
   
  0.721
POPTR_0006s09730.1
annotation not available (566 aa)
     
   
  0.721
POPTR_0015s08560.1
Bidirectional sugar transporter SWEET; Mediates both low-affinity uptake and efflux of sugar across the membrane (237 aa)
           
  0.690
POPTR_0008s13800.1
Uncharacterized protein (329 aa)
           
  0.683
POPTR_0010s13520.1
Oxidoreductase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHR9_POPTR] (320 aa)
           
  0.677
POPTR_0008s11910.1
Oxidoreductase family protein (320 aa)
           
  0.677
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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