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POPTR_0001s13180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s13180.1" - CTD phosphatase-like protein 3 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s13180.1CTD phosphatase-like protein 3 (1190 aa)    
Predicted Functional Partners:
POPTR_0016s01680.1
Transcription initiation factor IIF alpha subunit family protein (540 aa)
     
 
  0.916
POPTR_0006s01070.1
Transcription initiation factor IIF alpha subunit family protein (541 aa)
     
 
  0.916
POPTR_0010s08790.1
annotation not available (200 aa)
       
 
  0.793
POPTR_0010s08780.1
Uncharacterized protein (189 aa)
       
 
  0.793
POPTR_0008s16160.1
RNA polymerase Rpb7 N-terminal domain-containing family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGH2_POPTR] (176 aa)
       
 
  0.793
POPTR_0001s38630.1
DNA-directed RNA polymerase II 19 kDa polypeptide family protein (176 aa)
       
 
  0.793
POPTR_0005s10940.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
     
 
  0.790
POPTR_0017s12860.1
Uncharacterized protein (318 aa)
     
 
  0.790
POPTR_0016s05750.1
Transcription initiation factor IIB-1 family protein (312 aa)
     
 
  0.790
POPTR_0015s07880.1
Transcription initiation factor IIB-1 family protein (311 aa)
     
 
  0.790
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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