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POPTR_0001s13180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s13180.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s13180.1Predicted protein (1190 aa)    
Predicted Functional Partners:
POPTR_0006s01070.1
Predicted protein (541 aa)
     
  0.981
POPTR_0005s10940.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
     
  0.977
POPTR_0001s08650.1
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1109 aa)
     
  0.976
POPTR_0003s19630.1
RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GWX9_POPTR]; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1920 aa)
     
  0.976
POPTR_0001s06450.1
RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GM06_POPTR]; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (842 aa)
     
  0.976
POPTR_0009s10050.1
Predicted protein (323 aa)
       
  0.969
POPTR_0010s08790.1
Uncharacterized protein (200 aa)
       
  0.952
POPTR_0010s08780.1
Predicted protein (189 aa)
       
  0.952
POPTR_0008s16160.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGH2_POPTR] (176 aa)
       
  0.952
POPTR_0001s38630.1
Predicted protein (176 aa)
       
  0.952
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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