STRINGSTRING
POPTR_0001s14080.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s14080.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s14080.1Predicted protein (280 aa)    
Predicted Functional Partners:
POPTR_0010s21860.1
Predicted protein (277 aa)
     
   
0.514
POPTR_0003s20290.1
Predicted protein (463 aa)
     
   
  0.510
POPTR_0009s13350.1
Predicted protein (184 aa)
     
   
  0.470
POPTR_0001s14070.1
Predicted protein (210 aa)
     
     
0.470
POPTR_0006s22510.1
UPF0497 membrane protein 8; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity) (199 aa)
     
        0.448
POPTR_0001s10130.1
Predicted protein (183 aa)
     
   
  0.435
POPTR_0008s04910.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002312028.1] (242 aa)
     
   
0.432
POPTR_0009s16160.1
UPF0497 membrane protein 7; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity) (198 aa)
     
        0.420
POPTR_0001s41630.1
Predicted protein (154 aa)
     
        0.412
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (21%) [HD]