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POPTR_0001s14950.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s14950.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s14950.1Uncharacterized protein (166 aa)    
Predicted Functional Partners:
POPTR_0017s13880.1
4-coumarate--CoA ligase family protein; 4-coumarate-coa ligaseAcyl-coa ligase [source-UniProtKB/TrEMBL;Acc-B9N213_POPTR] (543 aa)
         
  0.930
Ptr4CL8
4-coumarate--CoA ligase family protein; 4-coumarate-coa ligase [source-UniProtKB/TrEMBL;Acc-B9H3P7_POPTR] (543 aa)
         
  0.930
POPTR_0019s15110.1
Cytochrome P450Trans-cinnamate 4-hydroxylaseTrans-cinnamate 4-monooxygenase [source-UniProtKB/TrEMBL;Acc-B2Z6P4_POPTR] (505 aa)
     
  0.928
POPTR_0003s17130.1
annotation not available (366 aa)
         
  0.921
ACLL14
4-coumarate--CoA ligase family protein; Acyl-coa ligase [source-UniProtKB/TrEMBL;Acc-B9GMK1_POPTR] (545 aa)
         
  0.921
POPTR_0018s06060.1
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family (414 aa)
         
  0.918
Ptr4CL4
4-Coumarate-CoA ligasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGE3_POPTR] (570 aa)
         
  0.910
POPTR_0003s09880.1
Uncharacterized protein; 4-coumarate-coa ligase [source-UniProtKB/TrEMBL;Acc-B9GZT7_POPTR] (557 aa)
         
  0.909
POPTR_0018s10210.1
4-coumarate-CoA ligase 2 family protein; 4-Coumarate-CoA ligase (Ptr4CL1), mRNA [source-RefSeq DNA_predicted;Acc-XM_002324441.1] (399 aa)
     
 
  0.880
Ptr4CL15
Uncharacterized protein; 4-coumarate-coa ligase [source-UniProtKB/TrEMBL;Acc-B9PFQ4_POPTR] (417 aa)
     
 
  0.880
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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