• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s15370.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s15370.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s15370.1Uncharacterized protein (173 aa)    
Predicted Functional Partners:
POPTR_0014s07160.1
COP9 signalosome complex subunit 1 family protein (436 aa)
     
 
  0.990
POPTR_0002s15590.1
COP9 signalosome complex subunit 1 family protein (436 aa)
     
 
  0.990
POPTR_0017s10410.1
annotation not available (440 aa)
     
 
  0.981
POPTR_0001s34180.1
Uncharacterized protein (423 aa)
     
 
  0.981
POPTR_0011s17270.1
COP9 signalosome subunit 6 family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFV1_POPTR] (306 aa)
     
 
  0.972
POPTR_0014s17920.1
Uncharacterized protein (397 aa)
     
 
  0.952
POPTR_0002s26400.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PB47_POPTR] (397 aa)
     
 
  0.952
POPTR_0003s01650.1
annotation not available (160 aa)
     
 
  0.949
POPTR_0001s21520.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002298157.1] (173 aa)
     
 
  0.949
POPTR_0018s03690.1
COP9 complex family protein (366 aa)
     
 
  0.943
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (8%) [HD]