STRINGSTRING
POPTR_0001s15490.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s15490.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s15490.1Predicted protein (302 aa)    
Predicted Functional Partners:
POPTR_0007s14590.1
Predicted protein (273 aa)
       
   
0.602
POPTR_0005s19080.1
Predicted protein (266 aa)
       
   
0.602
POPTR_0009s02850.1
Predicted protein (383 aa)
       
 
0.598
POPTR_0001s23680.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PG66_POPTR] (374 aa)
       
 
0.598
POPTR_0006s20820.1
Predicted protein (294 aa)
       
 
0.598
POPTR_0016s05890.1
Predicted protein (344 aa)
       
 
0.598
RBL901
Retinoblastoma-related protein [source-UniProtKB/Swiss-Prot;Acc-RBR_POPTR]; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (1035 aa)
       
 
  0.483
POPTR_0013s00220.1
Phytochrome [source-UniProtKB/TrEMBL;Acc-B9I6A9_POPTR]; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1126 aa)
       
 
  0.459
POPTR_0017s09820.1
Predicted protein (321 aa)
           
  0.424
POPTR_0002s09680.1
Annotation not available (836 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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