STRINGSTRING
POPTR_0001s15610.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s15610.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s15610.1Predicted protein (474 aa)    
Predicted Functional Partners:
POPTR_0019s10750.1
Annotation not available (354 aa)
 
  0.988
POPTR_0005s10490.1
Hypothetical protein (1128 aa)
   
  0.979
POPTR_0019s10740.1
Predicted protein (336 aa)
   
  0.978
POPTR_0014s12530.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P997_POPTR] (915 aa)
   
  0.970
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.900
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
  0.900
POPTR_0006s13750.1
Predicted protein (348 aa)
   
  0.833
POPTR_0010s09170.1
Predicted protein (352 aa)
   
  0.810
POPTR_0018s07150.1
Predicted protein (606 aa)
     
  0.791
POPTR_0003s10170.1
Predicted protein (790 aa)
     
  0.791
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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