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STRINGSTRING
POPTR_0001s15670.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s15670.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s15670.1annotation not available (115 aa)    
Predicted Functional Partners:
POPTR_0013s06690.1
Uncharacterized protein (660 aa)
     
 
  0.924
POPTR_0013s07350.1
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family (518 aa)
     
      0.846
POPTR_0013s15000.1
Uncharacterized protein (461 aa)
     
      0.835
POPTR_0003s17720.1
Ribosomal protein S15 (470 aa)
     
      0.832
POPTR_0018s14700.1
Ribosomal protein S17 (105 aa)
     
      0.810
POPTR_0006s07990.1
annotation not available (93 aa)
     
      0.810
POPTR_0014s03900.1
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (210 aa)
   
      0.759
POPTR_0012s12870.1
Uncharacterized protein (410 aa)
   
      0.759
POPTR_0002s13330.1
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (211 aa)
   
      0.759
POPTR_0015s03960.1
Uncharacterized protein (226 aa)
     
      0.746
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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