STRINGSTRING
POPTR_0001s15800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s15800.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s15800.1Predicted protein (1388 aa)    
Predicted Functional Partners:
POPTR_0015s08010.1
Predicted protein (301 aa)
       
  0.929
POPTR_0010s11060.1
Predicted protein (301 aa)
       
  0.929
POPTR_0008s14080.1
Uncharacterized protein (285 aa)
       
  0.929
POPTR_0009s06020.1
Transducin family protein (974 aa)
     
 
  0.804
POPTR_0010s21800.1
Transport protein Sec24 (1020 aa)
     
  0.793
POPTR_0008s04950.1
Predicted protein (1043 aa)
     
  0.785
POPTR_0004s21200.1
Predicted protein (744 aa)
     
  0.785
POPTR_0009s06030.1
Annotation not available (169 aa)
     
 
  0.782
POPTR_0001s26820.1
Hypothetical protein (990 aa)
     
 
  0.782
POPTR_0014s17660.1
Annotation not available (365 aa)
     
  0.776
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (9%) [HD]