STRINGSTRING
POPTR_0001s15850.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s15850.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s15850.1Predicted protein (132 aa)    
Predicted Functional Partners:
PRX93
Predicted protein (327 aa)
     
        0.470
PRX67
Predicted protein; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress (322 aa)
     
        0.470
POPTR_0006s03240.1
Predicted protein (600 aa)
     
        0.470
POPTR_0003s20330.1
Uncharacterized protein (192 aa)
     
        0.470
POPTR_0001s45150.1
Uncharacterized protein (335 aa)
     
        0.430
POPTR_0001s14220.1
Predicted protein (1152 aa)
     
        0.417
POPTR_0007s05590.1
Predicted protein (513 aa)
     
        0.406
POPTR_0019s03100.1
Hypothetical protein; Lipolytic acyl hydrolase (LAH) (410 aa)
     
   
  0.401
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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