STRINGSTRING
POPTR_0001s16010.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s16010.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s16010.1Predicted protein (471 aa)    
Predicted Functional Partners:
POPTR_0004s04190.1
Predicted protein (504 aa)
       
  0.981
POPTR_0001s15090.1
Predicted protein (213 aa)
 
   
  0.948
POPTR_0003s08190.1
Predicted protein (310 aa)
 
   
  0.814
POPTR_0009s07200.1
Predicted protein (531 aa)
 
   
  0.813
POPTR_0001s28020.1
Predicted protein (532 aa)
 
   
  0.812
POPTR_0014s01000.1
Predicted protein (612 aa)
   
   
  0.759
POPTR_0007s14900.1
Predicted protein (608 aa)
   
   
  0.759
POPTR_0003s01150.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGH5_POPTR] (531 aa)
       
  0.751
POPTR_0013s03070.1
Dehydroquinate dehydratase/ shikimate dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9I835_POPTR] (521 aa)
     
 
  0.742
POPTR_0010s02070.1
Dehydroquinate dehydratase/ shikimate dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9HSF2_POPTR] (538 aa)
     
 
  0.742
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (6%) [HD]