STRINGSTRING
POPTR_0001s16070.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s16070.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s16070.1Predicted protein (301 aa)    
Predicted Functional Partners:
POPTR_0012s03850.1
Predicted protein (265 aa)
         
  0.931
POPTR_0016s13770.1
Predicted protein (465 aa)
     
  0.849
POPTR_0009s13780.1
Predicted protein (231 aa)
     
 
    0.805
POPTR_0004s18160.1
Uncharacterized protein (185 aa)
     
 
    0.805
POPTR_0003s07190.1
Predicted protein (301 aa)
         
 
0.800
POPTR_0016s04090.1
Predicted protein (376 aa)
     
  0.779
POPTR_0006s04310.1
Predicted protein (541 aa)
     
  0.779
POPTR_0016s12010.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002323524.1] (395 aa)
     
  0.772
POPTR_0006s10680.1
Uncharacterized protein (130 aa)
     
  0.772
POPTR_0006s09880.1
Predicted protein (520 aa)
     
  0.772
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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