STRINGSTRING
POPTR_0001s16730.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s16730.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s16730.1Predicted protein (508 aa)    
Predicted Functional Partners:
POPTR_0006s10740.1
Predicted protein (477 aa)
   
  0.974
POPTR_0016s13970.1
Predicted protein (479 aa)
   
  0.974
POPTR_0007s06700.1
Predicted protein (192 aa)
   
  0.974
POPTR_0007s06190.1
Predicted protein (476 aa)
   
  0.974
POPTR_0005s08380.1
Uncharacterized protein (275 aa)
   
  0.974
POPTR_0001s08620.1
Predicted protein (577 aa)
   
 
  0.967
POPTR_0006s13650.1
Uncharacterized protein (1071 aa)
   
 
  0.958
POPTR_0014s13710.1
Predicted protein (736 aa)
   
  0.955
POPTR_0007s03910.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGZ0_POPTR] (380 aa)
   
  0.951
POPTR_0007s03900.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002309864.1] (380 aa)
   
  0.951
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]