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POPTR_0001s17400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s17400.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s17400.1Predicted protein (1133 aa)    
Predicted Functional Partners:
POPTR_0014s12750.1
Predicted protein (929 aa)
   
0.995
POPTR_0006s23860.1
Predicted protein (404 aa)
     
 
  0.938
POPTR_0003s07470.1
Predicted protein (251 aa)
     
 
  0.885
POPTR_0001s15810.1
Predicted protein (253 aa)
     
 
  0.885
POPTR_0019s03680.1
Predicted protein; Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes (388 aa)
     
 
  0.883
POPTR_0013s04500.1
Predicted protein; Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes (393 aa)
     
 
  0.883
POPTR_0004s17990.1
Predicted protein (254 aa)
     
  0.801
POPTR_0014s15450.1
Predicted protein (567 aa)
     
  0.749
POPTR_0009s12780.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHT5_POPTR] (324 aa)
     
  0.749
POPTR_0006s20880.1
Uncharacterized protein (227 aa)
     
  0.749
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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