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POPTR_0001s17440.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s17440.1" - Anion exchange family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s17440.1Anion exchange family protein (645 aa)    
Predicted Functional Partners:
POPTR_0014s14270.1
Predicted protein (561 aa)
       
      0.704
POPTR_0002s23800.1
Predicted protein (475 aa)
       
      0.704
POPTR_0019s10040.1
Predicted protein (864 aa)
       
      0.599
POPTR_0013s10510.1
Predicted protein (922 aa)
       
      0.599
POPTR_0011s05260.1
Predicted protein (750 aa)
       
      0.597
POPTR_0004s04380.1
Predicted protein (740 aa)
       
      0.597
POPTR_0016s10270.1
Predicted protein (592 aa)
     
   
  0.492
POPTR_0006s09270.1
Predicted protein (585 aa)
     
   
  0.492
POPTR_0017s08610.1
Adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (485 aa)
       
 
  0.476
POPTR_0001s32780.1
Adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (485 aa)
       
 
  0.476
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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