STRINGSTRING
POPTR_0001s17680.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s17680.1" - Gibberellin 3-oxidase [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s17680.1Gibberellin 3-oxidase [source-UniProtKB/TrEMBL;Acc-B9GEI2_POPTR] (372 aa)    
Predicted Functional Partners:
POPTR_0014s06960.1
Gibberellin 20-oxidase [source-UniProtKB/TrEMBL;Acc-B9IC40_POPTR] (384 aa)
    
   
0.923
POPTR_0002s15260.1
Gibberellin 20-oxidase [source-UniProtKB/TrEMBL;Acc-B9GPT0_POPTR] (366 aa)
    
   
0.922
POPTR_0012s14040.1
Gibberellin 20-oxidase [source-UniProtKB/TrEMBL;Acc-B9I4H1_POPTR] (385 aa)
    
   
0.920
POPTR_0010s10700.1
Hypothetical protein (338 aa)
    
   
0.920
POPTR_0015s14030.1
Giberellin 20-oxidase [source-UniProtKB/TrEMBL;Acc-A7XAE3_POPTR] (385 aa)
    
   
0.920
POPTR_0004s02200.1
Hypothetical protein (333 aa)
    
   
0.918
POPTR_0008s14460.1
Hypothetical protein (310 aa)
    
   
0.917
POPTR_0004s06380.1
Gibberellin 2-oxidase [source-UniProtKB/TrEMBL;Acc-B9H2B5_POPTR] (332 aa)
    
   
0.917
POPTR_0001s38760.1
Gibberellin 2-oxidase [source-UniProtKB/TrEMBL;Acc-B9GGW7_POPTR] (332 aa)
    
   
0.917
POPTR_0011s09770.1
Gibberellin 2-oxidase [source-UniProtKB/TrEMBL;Acc-B9I1C4_POPTR] (332 aa)
    
   
0.917
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (6%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >