STRINGSTRING
POPTR_0001s17840.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s17840.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s17840.1Predicted protein (340 aa)    
Predicted Functional Partners:
POPTR_0001s40100.1
Predicted protein (375 aa)
     
  0.986
POPTR_0016s12770.1
Predicted protein (735 aa)
       
  0.983
POPTR_0010s10490.1
Predicted protein (508 aa)
       
  0.864
POPTR_0002s05500.1
Predicted protein (758 aa)
     
 
  0.759
POPTR_0004s09310.1
Predicted protein (1142 aa)
     
  0.758
POPTR_0001s41800.1
Predicted protein (747 aa)
     
 
  0.747
POPTR_0001s32760.1
Predicted protein (1316 aa)
     
 
  0.735
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.718
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
  0.718
POPTR_0015s12710.1
Predicted protein (517 aa)
     
 
  0.688
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (14%) [HD]