STRINGSTRING
POPTR_0001s17900.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s17900.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s17900.1Predicted protein (220 aa)    
Predicted Functional Partners:
POPTR_0001s23400.1
Predicted protein (373 aa)
   
 
  0.838
POPTR_0019s10280.1
Predicted protein (289 aa)
   
        0.569
POPTR_0004s14810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGV2_POPTR] (588 aa)
   
   
  0.567
POPTR_0001s34270.1
Predicted protein (691 aa)
   
   
  0.539
POPTR_0009s05400.1
Predicted protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (786 aa)
         
  0.532
POPTR_0009s10440.1
Uncharacterized protein (467 aa)
   
   
  0.527
POPTR_0009s05730.1
Predicted protein (690 aa)
   
   
  0.527
POPTR_0001s34260.1
Uncharacterized protein (326 aa)
   
   
  0.527
POPTR_0001s26420.1
Uncharacterized protein (676 aa)
   
   
  0.527
POPTR_0143s00200.1
High affinity nitrate transporter [source-UniProtKB/TrEMBL;Acc-B9HQM0_POPTR] (530 aa)
   
        0.518
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (6%) [HD]