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POPTR_0001s19000.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s19000.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s19000.1Predicted protein (239 aa)    
Predicted Functional Partners:
POPTR_0015s08500.1
Rna-dependent RNA polymerase [source-UniProtKB/TrEMBL;Acc-B9IEP4_POPTR] (1110 aa)
       
 
  0.740
POPTR_0009s10050.1
Predicted protein (323 aa)
       
 
  0.633
POPTR_0018s02540.1
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1181 aa)
     
      0.622
POPTR_0014s04910.1
Uncharacterized protein (1178 aa)
       
 
  0.542
POPTR_0010s19110.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9HSI9_POPTR] (1240 aa)
       
 
  0.542
POPTR_0008s07350.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9HHV5_POPTR] (1234 aa)
       
 
  0.542
POPTR_0003s19630.1
RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GWX9_POPTR]; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1920 aa)
       
 
  0.513
POPTR_0001s08650.1
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1109 aa)
       
 
  0.513
POPTR_0001s06450.1
RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GM06_POPTR]; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (842 aa)
       
 
  0.513
RDM1
Predicted protein (175 aa)
           
  0.509
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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